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September 8, 2002

DNA Software Receives Michigan Life Sciences Corridor Award to Develop Software DNA Assay Design

Ann Arbor, MI – September 8, 2002 — DNA Software finalized the terms of its Michigan Life Sciences Corridor (MLSC) award from the Michigan Economic Development Corporation. The $932,000 investment will be used to develop software to design DNA assays.

DNA Software will use the award to apply the company’s existing software platform, the Oligonucleotide Modeling Platform™ (OMP™), to the field of assay design. The new software builds on OMP™’s precise modeling engine and will be used by scientists to design assay. These types of studies have many applications including drug target identification, cancer diagnosis, determining drug mechanisms and side effects, and personalized medicine. The company expects to release the software commercially next summer.

This is the first outside investment in the company. “We founded the company hoping to solve real medical problems that affect real people,” says Mark A. Kielb, company co-founder and president. “Having grown exclusively through customer revenues has kept us tightly focused on customer needs. With the MLSC award we can reach new customers in an area which will significantly improve, and sometimes save, people’s lives.” DNA Software was founded in December 2000 by Mr. Kielb and John SantaLucia Jr., Ph.D., an associate professor at Wayne State University.

According to Don Hicks, DNA Software COO and principal investigator of the project, “We are very pleased to receive this investment from the state. DNA Software was started to bring together an integrated approach from the leading science out of John SantaLucia's lab from Wayne State University with some of the newest developments in software technology. This investment from the state will enable the development of the premier platform in this area for the simulation analysis and design of the nucleic acid based assays. DNA/RNA hybridization is the backbone of most of the commonly used assay designs out there, including PCR, nucleic acid based probes, and microarrays. The improved ability to predict nucleic acid hybridization should reduce the time to market for designers of existing assay platforms as well as improving the capabilities to test out and deploy new platforms that are necessary to exploit the advantages of a growing and changing market in the genomic area, and to support advancements in personalized medicine.”

DNA Software’s winning proposal included collaborations with researchers at the Applied Genomics Technology Center (AGTC) at Wayne State University in Detroit, and the Michigan Center for Biological Information (MCBI) at the University of Michigan in Ann Arbor. The software will fill a critical gap, according to Dr. Mark Hughes, Director of the AGTC and the Center for Molecular Medicine and Genetics at Wayne State, “We have the instrumentation and skill set to perform array work, but we lack the complex software tools needed to design and test in silico, before the bench work, the thousands of oligonucleotides [small pieces of DNA] that will be printed on the microarrays.”

As part of the collaboration with the AGTC, the software will be leveraged by two exciting on-going clinical studies. In the first, DNA Software will work with Dr. Andrew Sloan, at the Karmanos Cancer Institute, to design assays to aid in distinguishing patients who are receptive to certain cancer therapies from those who aren’t. Dr. Sloan is convinced that “if we can develop such an assay, it will quickly be adopted by the neuro-oncology community as the standard of care for the treatment of these devastating neoplasms.”

In the second project, DNA Software will work with Dr. Roy Baynes, Director of Bone Marrow and Stem Cell Transplantation at the Karmanos Cancer Institute, to develop microarrays that help screen for potential transplant matches using high-resolution HLA typing. “If this strategy proves to be accurate, truly high throughput, and rapid, it promises to shorten the time to donor identification and will both improve outcomes and translate into lives saved,” according to Dr. Baynes.

About DNA Software, Inc.
DNA Software, Inc. combines science and software to enable industrial genomics through advances in technologies based on nucleic acids. The company’s first software platform, OMP™ (Oligonucleotide Modeling Platform™), models in silico the folding and hybridization of single-stranded nucleic acids with great accuracy. The company combines OMP™ with scientific consulting, custom software development, and custom laboratory research to deliver state-of-the-art support for designing and developing of nucleic acid based technologies.

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Thursday, 06 November 2014 22:15

DNA Software introduced the full commercial release of ThermoBLAST Cloud Edition (TB-CE). TB-CE provides a new standard for evaluating the target specificity of oligonucleotides.  Click here to learn more.  

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“We find it [Visual OMP™] makes very accurate and sometimes surprising (but true) predictions about binding efficiency in multiplexes...” David Whitcombe, Chief Scientific Officer, DxS Ltd, UK.
“It [Visual OMP™] is very powerful software when used for multiplexing design...” Chris Novak, Ambion
“I have designed over 10,000 PCR assays in my experience with DNA Software’s Visual OMP™ and found greater than 95% success rate when using it to design my assays compared to less than 20% success without it.” Dr. Eric Bruening, MolecularMD
“I have been using DNA [Software™] for a long time, at least 8 years. I want to have the best tools available and that is why we use it.” Dr. Nancy Schoenbrunner, Roche Molecular Systems
“I am a long-term user of Visual OMP™. I like this program very much because it provides a solid scientific basis for oligo design and cuts the development time by more than half.” Olga Budker, longtime Visual OMP user
“In my experience, DNA Software™ saved me 75% of my oligo costs.” Helen Minnis, Wave 80
“DNA [Software™] has passed my tests. I’ve recommended it [Visual OMP™]. It performs extremely well.” Dr. Ned Sekinger, Luminex Corporation
“Learning to use the program [Visual OMP™] is time well spent, and the support staff at DNA Software is always ready and able to help” Dr. Sue J. Kohlhepp, Providence Portland Medical Center.